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<h1>Report for cDNA subcluster: 2</h1><h3> of cluster: 48 (annotdb_asmbl_id:68711 coords:8897-12222)</h3><form name="form1" method="get" onchange="if (document.form1.links1.selectedIndex != 0) { openWindow(document.form1.links1[document.form1.links1.selectedIndex].value); }">
<select name="links1"><option>-68711-links-</option>
<option value="http://intranet.tigr.org/tigr-scripts/AnnotationStation/AssemblyNavigator/euk_assembly_navigator.cgi?db=__ANNOT_DB_NAME__&amp;LEND=8897&amp;REND=12222&amp;asmbl_id=68711&amp;submit=1">GenomeViewer</option>
</select></form>
<h2>Subcluster view.</h2>
<img src="assemblyReport_files/asmbl_image_generator.gif" alt="asmbl_image">
<h2>Assembly description</h2><table border="3">
<tbody><tr><th>assembly</th><th>cdnas</th><th>annotations linked</th><th>status</th><th>comment</th></tr>
<tr><td rowspan="2">asmbl_3</td><td>&nbsp;</td><td><table border="1"> <tbody><tr><td>gene: 68711.t00007 <br>&nbsp;model: model.68711.m00007<form name="form3" method="get" onchange="if (document.form3.links3.selectedIndex != 0) { openWindow(document.form3.links3[document.form3.links3.selectedIndex].value); }">
<select name="links3"><option>-model.68711.m00007-links-</option>
<option value="http://manatee.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=__ANNOT_DB_NAME__;orf=model.68711.m00007">manatee</option>
</select></form>
<a href="http://localhost:8080/cgi-bin/PASA/cgi-bin/gene_centric_image_generator.dbi?db=sample_mydb_pasa&amp;compare_id=1&amp;TU=68711.t00007" target="_new">AllGeneUpdates</a></td></tr> </tbody></table></td><td>8. incompatible fl-cdna assembly alignment updates gene structure.</td><td>Passed validation test.  Aligns with 91.216 % ID across 94.468085106383 % of the shorter  protein length.
-Should update non-compatible gene with available fl-cDNA.<br>Applied to 68711.t00007,model.68711.m00007<br><pre>&gt;asmbl_3-based protein<br><code>MASRKLVRDLLITKQPLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEAD
SNPEFQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSVK
DKFSAATEEVKESFKLGKEESAESASSSGTGTTEGEKQQQQSGSTEEQDTFFGKFKSSIS
SPKLSEAFHKPLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERSTRTEMVIMPTK
QSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSDNPIVHKIQDM
NERIFEETGSASTYKEIRRRDPSFSLPDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKEL
IERCTAEHRAFTSQGYFFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEIFCVRDQDGK
IKEGGQDTIHTVYYDWAMQQVDAAELGEDAIYPIWRLREMLRAGVQALI*</code></pre></td></tr>
<tr><td colspan="4"><img src="assemblyReport_files/asmbl_image_generator_002.gif" alt="asmbl_image"></td></tr>
<tr><td colspan="5" bgcolor="#000000">&nbsp;</td></tr>
</tbody></table><h2>cDNA information</h2>
<table border="2">
<tbody><tr><th>cDNA acc</th><th>alignment program</th><th>spliced orientation</th><th>Seq Length</th><th>Full-length status</th><th>Title</th></tr>
<tr><td rowspan="2">gi|59846715|gb|BP810636.1|BP810636</td><td>gmap</td><td>+</td><td>390</td><td bgcolor="#ffffff">0</td><td>gi|59846715|gb|BP810636.1|BP810636 BP810636 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-26-N16 5', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 96.7538461538462</th><th>percent_aligned: 100</th><td colspan="3">Alignment: orient(a+/s+) align: 8959(1)-9207(248)&gt;GT....AG&lt;9290(249)-9396(356)&gt;GT....AG&lt;9477(357)-9511(390)</td></tr>
<tr><td rowspan="2">gi|48990638|gb|BP574872.1|BP574872</td><td>gmap</td><td>+</td><td>371</td><td bgcolor="#ffffff">0</td><td>gi|48990638|gb|BP574872.1|BP574872 BP574872 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-89-N14 3', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 96.8227146814404</th><th>percent_aligned: 97.3045822102426</th><td colspan="3">Alignment: orient(a-/s+) align: 11626(361)-11689(298)&gt;GT....AG&lt;11778(297)-12075(1)</td></tr>
<tr><td rowspan="2">gi|59906223|gb|BP845250.1|BP845250</td><td>gmap</td><td>+</td><td>391</td><td bgcolor="#ffffff">0</td><td>gi|59906223|gb|BP845250.1|BP845250 BP845250 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-93-A19 5', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 99.7157894736842</th><th>percent_aligned: 97.1867007672634</th><td colspan="3">Alignment: orient(a+/s+) align: 8959(1)-9207(249)&gt;GT....AG&lt;9290(250)-9396(357)&gt;GT....AG&lt;9477(358)-9499(380)</td></tr>
<tr><td rowspan="2">gi|19875340|gb|AU236171.1|AU236171</td><td>gmap</td><td>+</td><td>375</td><td bgcolor="#ffffff">0</td><td>gi|19875340|gb|AU236171.1|AU236171 AU236171 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-73-I09 5', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 99.44</th><th>percent_aligned: 100</th><td colspan="3">Alignment: orient(a+/s+) align: 8938(1)-9207(270)&gt;GT....AG&lt;9290(271)-9392(375)</td></tr>
<tr><td rowspan="2">gi|49231624|gb|BP601380.1|BP601380</td><td>gmap</td><td>?</td><td>434</td><td bgcolor="#ffffff">0</td><td>gi|49231624|gb|BP601380.1|BP601380 BP601380 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-49-M08 3', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 100</th><th>percent_aligned: 100</th><td colspan="3">Alignment: orient(a-/s?) align: 11789(434)-12222(1)</td></tr>
<tr><td rowspan="2">gi|86066808|gb|DR362565.1|DR362565</td><td>gmap</td><td>+</td><td>362</td><td bgcolor="#ffffff">0</td><td>gi|86066808|gb|DR362565.1|DR362565 6628664 CERES-AL45 Arabidopsis thaliana cDNA clone 1192839 5', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 99</th><th>percent_aligned: 98.3425414364641</th><td colspan="3">Alignment: orient(a+/s+) align: 8956(7)-9207(258)&gt;GT....AG&lt;9290(259)-9393(362)</td></tr>
<tr><td rowspan="2">gi|86087708|gb|DR383467.1|DR383467</td><td>gmap</td><td>+</td><td>619</td><td bgcolor="#ffffff">0</td><td>gi|86087708|gb|DR383467.1|DR383467 13801692 CERES-AL45 Arabidopsis thaliana cDNA clone 1192839 3', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 97.1922455573506</th><th>percent_aligned: 100</th><td colspan="3">Alignment:
orient(a+/s+) align:
11273(1)-11353(81)&gt;GT....AG&lt;11471(82)-11542(153)&gt;GT....AG&lt;11627(154)-11689(216)&gt;GT....AG&lt;11778(217)-12192(619)</td></tr>
<tr><td rowspan="2">gi|59793247|gb|BP797053.1|BP797053</td><td>gmap</td><td>+</td><td>388</td><td bgcolor="#ffffff">0</td><td>gi|59793247|gb|BP797053.1|BP797053 BP797053 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-01-O20 5', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 98</th><th>percent_aligned: 97.1649484536082</th><td colspan="3">Alignment: orient(a+/s+) align: 8939(1)-9207(271)&gt;GT....AG&lt;9290(272)-9396(377)</td></tr>
<tr><td rowspan="2">gi|86066807|gb|DR362564.1|DR362564</td><td>gmap</td><td>+</td><td>471</td><td bgcolor="#ffffff">0</td><td>gi|86066807|gb|DR362564.1|DR362564 5737251 CERES-AL46 Arabidopsis thaliana cDNA clone 1144811 5', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 99.2521739130435</th><th>percent_aligned: 97.6645435244161</th><td colspan="3">Alignment:
orient(a+/s+) align:
8958(2)-9207(251)&gt;GT....AG&lt;9290(252)-9396(358)&gt;GT....AG&lt;9477(359)-9560(444)&gt;GT....AG&lt;9655(445)-9671(461)</td></tr>
<tr><td rowspan="2">gi|53828526|gb|BT015810.1|</td><td>gmap</td><td>+</td><td>1785</td><td bgcolor="#0000ff">1</td><td>gi|53828526|gb|BT015810.1| Arabidopsis thaliana At2g36070 gene, complete cds</td></tr>
<tr><th></th><th>avg_per_id: 99.5675070028011</th><th>percent_aligned: 100</th><td colspan="3">Alignment:
orient(a+/s+) align:
9023(1)-9207(185)&gt;GT....AG&lt;9290(186)-9396(292)&gt;GT....AG&lt;9477(293)-9560(376)&gt;GT....AG&lt;9655(377)-9730(452)&gt;GT....AG&lt;10021(453)-10065(497)&gt;GT....AG&lt;10165(498)-10539(872)&gt;GT....AG&lt;10620(873)-10688(941)&gt;GT....AG&lt;10800(942)-10864(1006)&gt;GT....AG&lt;10953(1007)-11021(1075)&gt;GT....AG&lt;11096(1076)-11168(1148)&gt;GT....AG&lt;11249(1149)-11353(1253)&gt;GT....AG&lt;11471(1254)-11542(1325)&gt;GT....AG&lt;11627(1326)-11689(1388)&gt;GT....AG&lt;11778(1389)-12172(1785)</td></tr>
<tr><td rowspan="2">gi|59791635|gb|BP796201.1|BP796201</td><td>gmap</td><td>+</td><td>670</td><td bgcolor="#ffffff">0</td><td>gi|59791635|gb|BP796201.1|BP796201 BP796201 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-15-A19 5', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 99.2035928143713</th><th>percent_aligned: 99.7014925373134</th><td colspan="3">Alignment:
orient(a+/s+) align:
8897(2)-9207(313)&gt;GT....AG&lt;9290(314)-9396(420)&gt;GT....AG&lt;9477(421)-9560(504)&gt;GT....AG&lt;9655(505)-9730(580)&gt;GT....AG&lt;10021(581)-10065(625)&gt;GT....AG&lt;10165(626)-10209(669)</td></tr>
<tr><td rowspan="2">gi|49031483|gb|BP582273.1|BP582273</td><td>gmap</td><td>+</td><td>383</td><td bgcolor="#ffffff">0</td><td>gi|49031483|gb|BP582273.1|BP582273 BP582273 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-35-I09 3', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 96.5404699738903</th><th>percent_aligned: 100</th><td colspan="3">Alignment: orient(a-/s+) align: 11519(383)-11542(360)&gt;GT....AG&lt;11627(359)-11689(298)&gt;GT....AG&lt;11778(297)-12075(1)</td></tr>
<tr><td rowspan="2">gi|48989496|gb|BP573730.1|BP573730</td><td>gmap</td><td>+</td><td>369</td><td bgcolor="#ffffff">0</td><td>gi|48989496|gb|BP573730.1|BP573730 BP573730 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-85-G16 3', mRNA sequence</td></tr>
<tr><th></th><th>avg_per_id: 98.353591160221</th><th>percent_aligned: 98.1029810298103</th><td colspan="3">Alignment: orient(a-/s+) align: 11626(362)-11689(299)&gt;GT....AG&lt;11778(298)-12075(1)</td></tr>
</tbody></table>
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